Aaron E Maxwell , Sarah Farhadpour, Srinjoy Das

Convolutional neural network (CNN)-based deep learning (DL) methods have transformed the analysis of geospatial, Earth observation, and geophysical data due to their ability to model spatial context information at multiple scales. Such methods are especially applicable to pixel-level classification, or semantic segmentation, tasks. A variety of R packages have been developed for processing and analyzing geospatial data. However, there are currently no packages available for implementing geospatial DL in the R language and data science environment. This paper introduces the geodl R package, which supports pixel-level classification applied to a wide range of geospatial or Earth science data that can be represented as multidimensional arrays where each channel or band holds a predictor variable. geodl is built on the torch package, which supports the implementation of DL using the R and C++ languages without the need for installing a Python/PyTorch environment. This greatly simplifies the software environment needed to implement DL in R. Using geodl, geospatial raster-based data with varying numbers of bands, spatial resolutions, and coordinate reference systems are read and processed using the terra package, which makes use of C++ and allows for processing raster grids that are too large to fit into memory. Training loops are implemented with the luz package. The geodl package provides utility functions for creating raster masks or labels from vector-based geospatial data and image chips and associated masks from larger files and extents. It also defines a torch dataset subclass for geospatial data for use with torch data loaders. UNet-based models are provided with a variety of optional ancillary modules or modifications. Common assessment metrics (i.e., overall accuracy, class-level recalls or producer’s accuracies, class-level precisions or user’s accuracies, and class-level F1-scores) are implemented along with a modified version of the unified focal loss framework, which allows for defining a variety of loss metrics using one consistent implementation and set of hyperparameters. Users can assess models using standard geospatial and remote sensing metrics and methods and use trained models to predict to large spatial extents.