Preprints
Filtering by Subject: Environmental Microbiology and Microbial Ecology Life Sciences
Subsurface microbial community structure shifts along the geological features of the Central American Volcanic Arc
Published: 2024-02-04
Subjects: Biodiversity, Biogeochemistry, Earth Sciences, Environmental Microbiology and Microbial Ecology Life Sciences, Geochemistry, Geology, Microbiology, Volcanology
Subduction of the Cocos and Nazca oceanic plates beneath the Caribbean plate drives the upward movement of deep fluids enriched in carbon, nitrogen, sulfur, and iron along the Central American Volcanic Arc (CAVA). These compounds fuel diverse subsurface microbial communities that in turn alter the distribution, redox state, and isotopic composition of these compounds. Microbial community [...]
Plastics aplenty in paddy lands: incidence of microplastics in two rice cultivars of Kerala, India, and its impact on primary producers found in paddy fields
Published: 2023-11-14
Subjects: Environmental Microbiology and Microbial Ecology Life Sciences, Environmental Sciences, Terrestrial and Aquatic Ecology, Toxicology
Microplastics (MP) have received worldwide attention in recent years because of its prevalence in key ecosystems, including agroecosystems. Occurrence of MP in native paddy fields, which are critical to world’s food security, is not reported till date. This study reports the abundance of MP in two different rice cultivars, one of which is the ‘Pokkali’ crop that is Geographical Indication tagged [...]
Combined genomic and imaging techniques show intense arsenic enrichment caused by detoxification in a microbial mat of the Dead Sea shore
Published: 2023-09-26
Subjects: Biogeochemistry, Environmental Microbiology and Microbial Ecology Life Sciences, Geochemistry, Paleobiology
Microbial mats and microbialites are essential tools for reconstructing early life and its environments. To better understand microbial trace element cycling, a microbial mat was collected from the sinkhole systems of the western shores of the Dead Sea, a dynamic environment exhibiting diverse extreme environments. Intense arsenic enrichment (up to 6.5 million times higher than current water [...]
Chapter 4. Bacterial and archaeal DNA from lake sediments
Published: 2023-09-22
Subjects: Environmental Microbiology and Microbial Ecology Life Sciences, Life Sciences, Terrestrial and Aquatic Ecology
General microbial patterns of biogeography can be established based on sedimentary DNA (sedDNA) retrieved from diverse inland aquatic ecosystems, provided that certain variable environmental factors are taken into consideration in order to trace the admixture of prokaryotic sedDNA preserved in lacustrine sediments from source to sink. These include several watershed characteristics, such as [...]
Reactive iron as an important reservoir of marine organic carbon over geological timescales
Published: 2023-09-20
Subjects: Biogeochemistry, Earth Sciences, Environmental Microbiology and Microbial Ecology Life Sciences, Microbiology
Reactive iron (FeR) has been suggested to serve as a semi-persistent sink of organic carbon (OC) in surface marine sediments, where approximately 10-20% of total OC (TOC) is associated with FeR (FeR-OC). However, the persistence of FeR-OC on geological timescales remains poorly constrained. Here, we retrieved FeR-OC records in two long sediment cores of the northern South China Sea spanning [...]
Beyond microbial carbon use efficiency
Published: 2023-08-16
Subjects: Biogeochemistry, Earth Sciences, Environmental Microbiology and Microbial Ecology Life Sciences, Life Sciences, Physical Sciences and Mathematics, Soil Science
Microbial carbon use efficiency (CUE) is defined as the proportion of microbial biomass growth C versus substrate C uptake, and thus provides a useful measure of microbially driven accumulation and loss of soil organic carbon (SOC) 1. In a recent study published in Nature 2, the authors use a data-driven machine learning approach to conclude that CUE promotes global SOC storage based on a [...]
Surface bacterioplankton community structure crossing the Antarctic Circumpolar Current Fronts
Published: 2023-01-31
Subjects: Earth Sciences, Environmental Microbiology and Microbial Ecology Life Sciences
The Antarctic Circumpolar Current (ACC) is the major current in the Southern Ocean, isolating the warm stratified subtropical waters from the more homogeneous cold polar waters. The ACC flows from west to east around Antarctica and generates an overturning circulation by fostering deep-cold water upwelling and the formation of new water masses, affecting the Earth's heat balance and the global [...]
Trait-based modeling revealed higher microbial diversity leads to greater ecological resilience in response to an ecosystem disturbance
Published: 2022-10-15
Subjects: Biogeochemistry, Earth Sciences, Environmental Microbiology and Microbial Ecology Life Sciences, Microbiology, Oceanography, Oil, Gas, and Energy, Physical Sciences and Mathematics, Sustainability, Terrestrial and Aquatic Ecology
To quantitatively understand the ecological resilience of an ecosystem with specialized habitats, we focused on deep-sea microbial communities and simulated the response of diverse microbes in specialized habitats to a pulse ecosystem disturbance - the Deepwater Horizon Oil Spill in the Gulf of Mexico. Two microbial communities with equivalent metabolic libraries were acclimated to the presence [...]
Freshwater Suspended Particulate Matter – Key Components and Processes in Floc Formation and Dynamics.
Published: 2022-02-18
Subjects: Biogeochemistry, Environmental Chemistry, Environmental Microbiology and Microbial Ecology Life Sciences, Environmental Sciences, Fresh Water Studies, Geochemistry, Hydrology, Sedimentology
Freshwater suspended particulate matter (SPM) plays an important role in many biogeochemical cycles and serves multiple ecosystem functions. Most SPM is present as complex floc-like aggregate structures composed of various minerals and organic matter from the molecular to the organism level. Flocs provide habitat for microbes and feed for larger organisms. They constitute microbial bioreactors, [...]
A re-examination of the mechanism of whiting events: A new role for diatoms in Fayetteville Green Lake (New York, USA)
Published: 2021-05-08
Subjects: Biogeochemistry, Environmental Microbiology and Microbial Ecology Life Sciences, Geochemistry, Life Sciences, Sedimentology
Whiting events – the episodic precipitation of fine-grained suspended calcium cabonates in the water column – have been documented across a variety of marine and lacustrine environments. Whitings likely are a major source of carbonate muds, a constituent of limestones, and important archives for geochemical proxies of Earth history. While several biological and physical mechanisms have been [...]
The gap between atmospheric nitrogen deposition experiments and reality
Published: 2021-05-05
Subjects: Agricultural Science, Agriculture, Atmospheric Sciences, Biogeochemistry, Environmental Indicators and Impact Assessment, Environmental Microbiology and Microbial Ecology Life Sciences, Environmental Monitoring, Forest Biology, Other Environmental Sciences, Planetary Biogeochemistry, Soil Science, Terrestrial and Aquatic Ecology
Anthropogenic activities have dramatically altered the global nitrogen (N) cycle. Atmospheric N deposition, primarily from combustion of biomass and fossil fuels, has caused acidification of precipitation and freshwater and triggered intense research into ecosystem responses to this pollutant. Experimental simulations of N deposition have been the main scientific tool to understand ecosystem [...]
Mars Dichotomy: Prospects for human life on Mars
Published: 2021-03-04
Subjects: Biology, Environmental Microbiology and Microbial Ecology Life Sciences, Medical Sciences, Other Astrophysics and Astronomy, Other Food Science, Planetary Geology, Planetary Sciences
Within the framework of the Mars City State Contest 2020 of The Mars Society, from Colombia, with an interdisciplinary and academic perspective, it was sought to give a perspective of solutions and answers to the challenges of possible human life on Mars. Thus, the document initially addresses a forward-looking prologue, an introduction to the concept of the proposed state, taking as a starting [...]
Description of the continuous nature of organic matter in models of soil carbon dynamics
Published: 2020-05-29
Subjects: Applied Mathematics, Earth Sciences, Environmental Microbiology and Microbial Ecology Life Sciences, Geochemistry, Life Sciences, Microbiology, Physical Sciences and Mathematics, Soil Science
The understanding of soil organic matter (SOM) dynamics has considerably advanced in recent years. It was previously assumed that most SOM consisted of recalcitrant compounds, whereas the emerging view considers SOM as a range of polymers continuously processed into smaller molecules by decomposer enzymes. Mainstreaming these new insights in current models is challenging because of their [...]
Weak influence of paleoenvironmental conditions on the subsurface biosphere of lake Ohrid in the last 515 ka
Published: 2020-04-13
Subjects: Earth Sciences, Environmental Microbiology and Microbial Ecology Life Sciences, Environmental Sciences, Life Sciences, Microbiology, Other Earth Sciences, Paleobiology, Physical Sciences and Mathematics
Understanding the response of geo- and biosystems to past climatic disturbance is primordial to assess the short to long terms effects of current global change. Lacustrine sediments are commonly used to investigate the impact of climatic change on biogeochemical cycling. In these sediments, subsurface microbial communities play a primordial role in nutrient, organic matter and elemental cycling, [...]
Iron mineral dissolution releases iron and associated organic carbon during permafrost thaw
Published: 2020-02-07
Subjects: Environmental Microbiology and Microbial Ecology Life Sciences, Environmental Sciences, Life Sciences, Microbiology, Physical Sciences and Mathematics
It has been shown that reactive soil minerals, specifically iron(III) (oxyhydr)oxides, can trap organic carbon in soils overlying intact permafrost, and may limit carbon mobilization and degradation as it is observed in other environments. However, the use of iron(III)-bearing minerals as terminal electron acceptors in permafrost environments and thus their stability and capacity to prevent [...]